X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
otherSUBSTRATE-FREE CYP120A1

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
16.51.2 M SODIUM POTASSIUM TARTATE, 0.1 M MES PH6.5
Crystal Properties
Matthews coefficientSolvent content
2.8957.4

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 141.46α = 90
b = 132.97β = 114.5
c = 67.42γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray90CCDMARRESEARCHMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X10SASLSX10SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.120950.19.62.962855332.6

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTSUBSTRATE-FREE CYP120A12.119.85614973238950.2250.2230.267RANDOM27.95
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
3.61.68-1.69-0.51
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.797
r_dihedral_angle_4_deg21.429
r_dihedral_angle_3_deg16.78
r_dihedral_angle_1_deg6.409
r_scangle_it2.193
r_scbond_it1.397
r_angle_refined_deg1.37
r_mcangle_it1.029
r_mcbond_it0.595
r_nbtor_refined0.306
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.797
r_dihedral_angle_4_deg21.429
r_dihedral_angle_3_deg16.78
r_dihedral_angle_1_deg6.409
r_scangle_it2.193
r_scbond_it1.397
r_angle_refined_deg1.37
r_mcangle_it1.029
r_mcbond_it0.595
r_nbtor_refined0.306
r_symmetry_vdw_refined0.208
r_nbd_refined0.201
r_xyhbond_nbd_refined0.151
r_symmetry_hbond_refined0.15
r_chiral_restr0.086
r_bond_refined_d0.01
r_gen_planes_refined0.004
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms6891
Nucleic Acid Atoms
Solvent Atoms303
Heterogen Atoms130

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
MOLREPphasing