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CRYSTAL STRUCTURE OF A PROTEIN WITH UNKNOWN FUNCTION FROM DUF3225 FAMILY (ECA3500) FROM PECTOBACTERIUM ATROSEPTICUM SCRI1043 AT 2.32 A RESOLUTION
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 293 NANODROP, 1.1M Lithium chloride, 24.0% PEG 6000, 0.1M HEPES pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.62 52.97
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 93.375 α = 90 b = 93.524 β = 105.32 c = 72.919 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2007-07-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.97898 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.32 29.463 97.7 0.108 0.108 6 3.2 25597 38.72
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.32 2.38 97 0.639 0.639 1.1 3.2 1891
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.32 29.463 25596 1291 97.53 0.19 0.187 0.1961 0.242 0.2457 RANDOM 43.889
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.15 0.93 -3.3 4.94
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.277 r_dihedral_angle_4_deg 13.951 r_dihedral_angle_3_deg 12.051 r_scangle_it 5.854 r_scbond_it 4.686 r_dihedral_angle_1_deg 3.28 r_mcangle_it 2.298 r_mcbond_it 1.635 r_angle_refined_deg 1.535 r_angle_other_deg 1.029
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.277 r_dihedral_angle_4_deg 13.951 r_dihedral_angle_3_deg 12.051 r_scangle_it 5.854 r_scbond_it 4.686 r_dihedral_angle_1_deg 3.28 r_mcangle_it 2.298 r_mcbond_it 1.635 r_angle_refined_deg 1.535 r_angle_other_deg 1.029 r_mcbond_other 0.448 r_symmetry_vdw_other 0.285 r_nbd_refined 0.19 r_nbd_other 0.185 r_nbtor_refined 0.18 r_xyhbond_nbd_refined 0.178 r_symmetry_vdw_refined 0.128 r_symmetry_hbond_refined 0.111 r_chiral_restr 0.094 r_nbtor_other 0.087 r_bond_refined_d 0.014 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3969 Nucleic Acid Atoms Solvent Atoms 109 Heterogen Atoms 4
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHARP phasing MolProbity model building SCALA data scaling PDB_EXTRACT data extraction MAR345 data collection MOSFLM data reduction