☰ Navigation Tabs
Structure of S25-2 in Complex with Ko
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 300 PEG 4000, ethelyene glycol, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 300K
Crystal Properties Matthews coefficient Solvent content 2.55 51.73
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.8 α = 90 b = 81.3 β = 90 c = 132.35 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS 2007-05-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 19.97 0.068 10.9 4.15 33258
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2 2.07 0.218 4.5 4.15
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2 20 33218 1692 97.18 0.217 0.215 0.2108 0.262 0.2548 RANDOM 22.808
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.75 -0.88 -0.87
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.489 r_dihedral_angle_4_deg 17.505 r_dihedral_angle_3_deg 14.525 r_dihedral_angle_1_deg 7.09 r_scangle_it 3.672 r_scbond_it 2.733 r_mcangle_it 1.728 r_angle_refined_deg 1.705 r_mcbond_it 1.109 r_nbtor_refined 0.303
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.489 r_dihedral_angle_4_deg 17.505 r_dihedral_angle_3_deg 14.525 r_dihedral_angle_1_deg 7.09 r_scangle_it 3.672 r_scbond_it 2.733 r_mcangle_it 1.728 r_angle_refined_deg 1.705 r_mcbond_it 1.109 r_nbtor_refined 0.303 r_symmetry_metal_ion_refined 0.221 r_nbd_refined 0.202 r_symmetry_vdw_refined 0.193 r_symmetry_hbond_refined 0.169 r_xyhbond_nbd_refined 0.151 r_chiral_restr 0.111 r_metal_ion_refined 0.065 r_bond_refined_d 0.02 r_gen_planes_refined 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3355 Nucleic Acid Atoms Solvent Atoms 268 Heterogen Atoms 22
Software Software Software Name Purpose d*TREK data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction d*TREK data reduction