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Karyopherin beta2/transportin
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2H4M PDB entry 2h4m
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 298 3.2 M potassium formate, 0.1 M HEPES pH 7.5 and 10% Glycerol, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 3.79 67.54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 129.338 α = 90 b = 168.892 β = 93.18 c = 140.958 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2003-07-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 1.033 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.95 50 0.083 24 5 126673
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 2h4m 3 50 114642 6073 99.95 0.26185 0.26059 0.2467 0.28575 0.2717 RANDOM 73.183
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.41 3.26 0.61 -1.66
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.741 r_dihedral_angle_3_deg 18.944 r_dihedral_angle_4_deg 17.869 r_dihedral_angle_1_deg 4.69 r_scangle_it 1.458 r_angle_refined_deg 1.124 r_mcangle_it 0.905 r_scbond_it 0.848 r_mcbond_it 0.508 r_nbtor_refined 0.304
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.741 r_dihedral_angle_3_deg 18.944 r_dihedral_angle_4_deg 17.869 r_dihedral_angle_1_deg 4.69 r_scangle_it 1.458 r_angle_refined_deg 1.124 r_mcangle_it 0.905 r_scbond_it 0.848 r_mcbond_it 0.508 r_nbtor_refined 0.304 r_symmetry_vdw_refined 0.251 r_nbd_refined 0.226 r_symmetry_hbond_refined 0.223 r_xyhbond_nbd_refined 0.136 r_chiral_restr 0.079 r_bond_refined_d 0.008 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 25774 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-2000 data reduction HKL-2000 data scaling PHASER phasing