2Q4M

Ensemble refinement of the crystal structure of protein from Arabidopsis thaliana At5g01750


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1ZXUPDB entry 1ZXU

Crystallization

Crystal Properties
Matthews coefficientSolvent content
1.831.7

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 41.066α = 90
b = 57.499β = 90
c = 75.359γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray MSINGLE WAVELENGTH

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONRe-refinement using ensemble modelTHROUGHOUTPDB entry 1ZXU1.737.6820236103699.70.1580.1580.207RANDOM21.6
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.060.53-0.47
RMS Deviations
KeyRefinement Restraint Deviation
c_dihedral_angle_d26
c_scangle_it4.18
c_mcangle_it2.89
c_scbond_it2.79
c_angle_deg2
c_mcbond_it1.9
c_improper_angle_d1.28
c_bond_d0.021
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1287
Nucleic Acid Atoms
Solvent Atoms127
Heterogen Atoms4

Software

Software
Software NamePurpose
CNSrefinement
PDB_EXTRACTdata extraction
CNSphasing