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 2Q4M | pdb_00002q4m

Ensemble refinement of the crystal structure of protein from Arabidopsis thaliana At5g01750

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad2q4ma_ Alpha and beta proteins (a+b) Tubby C-terminal domain-like Tubby C-terminal domain-like At5g01750-like Hypothetical protein At5g01750 thale cress (Arabidopsis thaliana ) [TaxId: 3702 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2 FamilyAt5g01750-like 8031607 4003447 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyTubby C-terminal domain-like 8043985 3000593 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ALORe2q4mA1 A: beta barrelsX: Transcriptional factor tubby, C-terminal domainH: Transcriptional factor tubby, C-terminal domainT: Transcriptional factor tubby, C-terminal domainF: LORECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A2.40.160.200 Mainly Beta Beta Barrel Porin LURP1-relatedCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF04525LURP-one-related (LOR)LURP-one-relatedThe structure of this family has been solved. It comprises a 12-stranded beta barrel with a central C-terminal alpha helix. This helix is thought to be a transmembrane helix. It is structurally similar to the C-terminal domain of the Tubby protein [1 ...The structure of this family has been solved. It comprises a 12-stranded beta barrel with a central C-terminal alpha helix. This helix is thought to be a transmembrane helix. It is structurally similar to the C-terminal domain of the Tubby protein [1]. In plants it plays a role in defense against pathogens [2].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Protein At5g01750 -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR007612LURP-one-relatedFamily
IPR038595LURP-one-related superfamilyHomologous Superfamily
IPR025659Tubby-like, C-terminalHomologous Superfamily