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Cryptosporidium parvum cyclophilin type peptidyl-prolyl cis-trans isomerase cgd2_4120 in complex with cyclosporin A
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2PLU PDB ENTRY 2PLU
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 3.5 25 % PEG 3350, 0.1 M CITRIC ACID PH 3.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K
Crystal Properties Matthews coefficient Solvent content 2.15 42.81
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 36.482 α = 90 b = 119.303 β = 90 c = 127.877 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2007-04-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CHESS BEAMLINE F1 CHESS F1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 50 97.4 0.103 0.083 6.7 6.8 51177
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.86 78.8 0.353 0.312 2.4 4.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2PLU 1.8 34.88 51164 2598 97.3 0.195 0.193 0.1917 0.233 0.2328 RANDOM 21.33
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.25 0.43 -0.18
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.327 r_dihedral_angle_3_deg 13.486 r_dihedral_angle_4_deg 11.433 r_dihedral_angle_1_deg 6.452 r_scangle_it 3.36 r_scbond_it 2.225 r_angle_refined_deg 1.536 r_mcangle_it 1.472 r_mcbond_it 0.916 r_nbtor_refined 0.319
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.327 r_dihedral_angle_3_deg 13.486 r_dihedral_angle_4_deg 11.433 r_dihedral_angle_1_deg 6.452 r_scangle_it 3.36 r_scbond_it 2.225 r_angle_refined_deg 1.536 r_mcangle_it 1.472 r_mcbond_it 0.916 r_nbtor_refined 0.319 r_nbd_refined 0.222 r_symmetry_vdw_refined 0.18 r_xyhbond_nbd_refined 0.132 r_symmetry_hbond_refined 0.13 r_chiral_restr 0.104 r_bond_refined_d 0.015 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4096 Nucleic Acid Atoms Solvent Atoms 315 Heterogen Atoms
Software Software Software Name Purpose PHASER phasing REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling