X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1P2MPDB ENTRY 1P2M

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6298100 mM BTP, 10% 14% PEG 20,000, 200 mM NaCl, 5 mM DTT, pH 6, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
2.9658.46

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 101.971α = 90
b = 82.456β = 103.84
c = 125.32γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 3152006-06-15MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 8.2.11.0000ALS8.2.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.6250990.06627.23.7705157051522
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.621.68

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1P2M1.95070515373693.830.186180.183820.23097RANDOM20.472
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.720.521.08-1.55
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.777
r_dihedral_angle_4_deg19.46
r_dihedral_angle_3_deg17.231
r_dihedral_angle_1_deg5.742
r_sphericity_free5.531
r_scangle_it4.225
r_sphericity_bonded3.488
r_scbond_it2.816
r_rigid_bond_restr1.809
r_mcangle_it1.742
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.777
r_dihedral_angle_4_deg19.46
r_dihedral_angle_3_deg17.231
r_dihedral_angle_1_deg5.742
r_sphericity_free5.531
r_scangle_it4.225
r_sphericity_bonded3.488
r_scbond_it2.816
r_rigid_bond_restr1.809
r_mcangle_it1.742
r_angle_refined_deg1.641
r_mcbond_it1.202
r_nbtor_refined0.313
r_nbd_refined0.223
r_symmetry_hbond_refined0.193
r_symmetry_vdw_refined0.189
r_xyhbond_nbd_refined0.182
r_chiral_restr0.129
r_bond_refined_d0.015
r_gen_planes_refined0.006
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5627
Nucleic Acid Atoms
Solvent Atoms631
Heterogen Atoms50

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data collection
HKL-2000data reduction
HKL-2000data scaling
PHASERphasing