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Crystal structure of RGS3 RGS domain
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1FQI PDB ENTRY 1FQI
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 288 28% PEG 4000, 0.15M magnesium chloride, 0.1M glycine, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 288K
Crystal Properties Matthews coefficient Solvent content 3.18 61.28
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 77.236 α = 90 b = 60.849 β = 135.44 c = 57.406 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate mirrors 2006-08-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE ENRAF-NONIUS FR591 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 28 96.7 0.055 16.5 2.5 8099 8095 37.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.3 2.42 97.3 0.214 5.3 2.4 1177
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1FQI 2.3 20 8085 8085 373 96.65 0.221 0.221 0.193 0.25 0.2383 RANDOM 29.48
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.11 0.07 -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.957 r_dihedral_angle_4_deg 19.944 r_dihedral_angle_3_deg 16.778 r_dihedral_angle_1_deg 6.916 r_scangle_it 4.999 r_scbond_it 3.363 r_mcangle_it 2.165 r_angle_refined_deg 1.89 r_mcbond_it 1.323 r_nbtor_refined 0.305
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.957 r_dihedral_angle_4_deg 19.944 r_dihedral_angle_3_deg 16.778 r_dihedral_angle_1_deg 6.916 r_scangle_it 4.999 r_scbond_it 3.363 r_mcangle_it 2.165 r_angle_refined_deg 1.89 r_mcbond_it 1.323 r_nbtor_refined 0.305 r_symmetry_hbond_refined 0.237 r_nbd_refined 0.224 r_symmetry_vdw_refined 0.214 r_xyhbond_nbd_refined 0.178 r_chiral_restr 0.131 r_bond_refined_d 0.023 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1047 Nucleic Acid Atoms Solvent Atoms 62 Heterogen Atoms
Software Software Software Name Purpose MAR345dtb data collection MOLREP phasing REFMAC refinement MAR345 data collection MOSFLM data reduction CCP4 data scaling