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The Q403K mutant heme domain of flavocytochrome P450 BM3
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2HPD
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 277 100mM PIPES, 40mM MgSO4, 18-21% PEG 8000, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.56 51.88
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.753 α = 90 b = 152.792 β = 94.67 c = 61.504 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2004-08-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX9.6 0.979 SRS PX9.6
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 24 97.4 0.067 16.8 82572 29.115
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.9 1.97 84.3 0.343 2.6 7129
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2HPD 1.9 24 78417 4118 97.39 0.1845 0.18196 0.2325 0.2466 RANDOM 29.115
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.58 0.77 -1.14 2.84
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.657 r_scangle_it 4.656 r_scbond_it 3.227 r_angle_refined_deg 1.912 r_mcangle_it 1.862 r_mcbond_it 1.147 r_symmetry_hbond_refined 0.247 r_nbd_refined 0.24 r_chiral_restr 0.183 r_xyhbond_nbd_refined 0.18
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.657 r_scangle_it 4.656 r_scbond_it 3.227 r_angle_refined_deg 1.912 r_mcangle_it 1.862 r_mcbond_it 1.147 r_symmetry_hbond_refined 0.247 r_nbd_refined 0.24 r_chiral_restr 0.183 r_xyhbond_nbd_refined 0.18 r_symmetry_vdw_refined 0.147 r_bond_refined_d 0.024 r_gen_planes_refined 0.009 r_bond_other_d r_angle_other_deg r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7012 Nucleic Acid Atoms Solvent Atoms 800 Heterogen Atoms 86
Software Software Software Name Purpose REFMAC refinement ADSC data collection HKL-2000 data reduction SCALEPACK data scaling AMoRE phasing