2NBJ
DNA-archeal MC1 protein complex structure by NMR
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-1H NOESY | 1.18 mM [U-100% 15N] protein, 1.18 mM [U-100% 13C; U-100% 15N] A1-A15 DNA, 10 mM sodium phosphate, 100 mM sodium chloride, 1 mM EDTA | 90% H2O/10% D2O | 100 | 6 | ambient | 299 | |
2 | 3D 1H-15N NOESY | 1.18 mM [U-100% 15N] protein, 1.18 mM [U-100% 13C; U-100% 15N] A1-A15 DNA, 10 mM sodium phosphate, 100 mM sodium chloride, 1 mM EDTA | 90% H2O/10% D2O | 100 | 6 | ambient | 299 | |
3 | 2D 1H-15N HSQC | 0.85 mM [U-100% 15N] protein, 0.85 mM [U-100% 13C; U-100% 15N] A1-A15 DNA, 10 mM sodium phosphate, 100 mM sodium chloride, 1 mM EDTA, 10 mg/mL Pf1 phage | 90% H2O/10% D2O | 100 | 6 | ambient | 299 | |
4 | 2D 1H-13C HSQC | 0.85 mM [U-100% 15N] protein, 0.85 mM [U-100% 13C; U-100% 15N] A1-A15 DNA, 10 mM sodium phosphate, 100 mM sodium chloride, 1 mM EDTA, 10 mg/mL Pf1 phage | 90% H2O/10% D2O | 100 | 6 | ambient | 299 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 600 |
2 | Bruker | AVANCE | 700 |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the least restraint violations |
Conformers Calculated Total Number | 200 |
Conformers Submitted Total Number | 12 |
Representative Model | 1 (fewest violations) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | collection | TopSpin | Bruker Biospin | |
2 | processing | TopSpin | Bruker Biospin | |
3 | collection | VNMR | Varian | |
4 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
5 | peak picking | CcpNMR | CCPN | |
6 | data analysis | CcpNMR | CCPN | |
7 | structure solution | HADDOCK | Alexandre Bonvin | |
8 | refinement | HADDOCK | Alexandre Bonvin | |
9 | refinement | CNS | Brunger, Adams, Clore, Gros, Nilges and Read |