2NBJ | pdb_00002nbj

DNA-archeal MC1 protein complex structure by NMR

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-1H NOESY	1.18 mM [U-100% 15N] protein, 1.18 mM [U-100% 13C; U-100% 15N] A1-A15 DNA, 10 mM sodium phosphate, 100 mM sodium chloride, 1 mM EDTA	90% H2O/10% D2O	100	6	ambient	299
2	3D 1H-15N NOESY	1.18 mM [U-100% 15N] protein, 1.18 mM [U-100% 13C; U-100% 15N] A1-A15 DNA, 10 mM sodium phosphate, 100 mM sodium chloride, 1 mM EDTA	90% H2O/10% D2O	100	6	ambient	299
3	2D 1H-15N HSQC	0.85 mM [U-100% 15N] protein, 0.85 mM [U-100% 13C; U-100% 15N] A1-A15 DNA, 10 mM sodium phosphate, 100 mM sodium chloride, 1 mM EDTA, 10 mg/mL Pf1 phage	90% H2O/10% D2O	100	6	ambient	299
4	2D 1H-13C HSQC	0.85 mM [U-100% 15N] protein, 0.85 mM [U-100% 13C; U-100% 15N] A1-A15 DNA, 10 mM sodium phosphate, 100 mM sodium chloride, 1 mM EDTA, 10 mg/mL Pf1 phage	90% H2O/10% D2O	100	6	ambient	299

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Varian	INOVA	600
2	Bruker	AVANCE	700

NMR Ensemble Information
Conformer Selection Criteria	structures with the least restraint violations
Conformers Calculated Total Number	200
Conformers Submitted Total Number	12
Representative Model	1 (fewest violations)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	collection	TopSpin		Bruker Biospin
2	processing	TopSpin		Bruker Biospin
3	collection	VNMR		Varian
4	processing	NMRPipe		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
5	peak picking	CcpNMR		CCPN
6	data analysis	CcpNMR		CCPN
7	structure solution	HADDOCK		Alexandre Bonvin
8	refinement	HADDOCK		Alexandre Bonvin
9	refinement	CNS		Brunger, Adams, Clore, Gros, Nilges and Read