2NAZ
The solution NMR structure of the C-terminal effector domain of BfmR from Acinetobacter baumannii
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 1 mM [U-100% 13C; U-100% 15N] BfmrC, 0.025 M Tris-HCl, 0.05 M KCl | 90% H2O/10% D2O | 0.05 | 6.5 | 1 atm | 273 | |
2 | 3D HNCO | 1 mM [U-100% 13C; U-100% 15N] BfmrC, 0.025 M Tris-HCl, 0.05 M KCl | 90% H2O/10% D2O | 0.05 | 6.5 | 1 atm | 273 | |
3 | 3D HNCACB | 1 mM [U-100% 13C; U-100% 15N] BfmrC, 0.025 M Tris-HCl, 0.05 M KCl | 90% H2O/10% D2O | 0.05 | 6.5 | 1 atm | 273 | |
4 | 3D C(CO)NH | 1 mM [U-100% 13C; U-100% 15N] BfmrC, 0.025 M Tris-HCl, 0.05 M KCl | 90% H2O/10% D2O | 0.05 | 6.5 | 1 atm | 273 | |
5 | 3D CBCA(CO)NH | 1 mM [U-100% 13C; U-100% 15N] BfmrC, 0.025 M Tris-HCl, 0.05 M KCl | 90% H2O/10% D2O | 0.05 | 6.5 | 1 atm | 273 | |
6 | 3D HCCH-TOCSY | 1 mM [U-100% 13C] BfmrC, 0.025 M Tris-HCl, 0.05 M KCl | 100% D2O | 0.05 | 6.5 | 1 atm | 273 | |
7 | 3D H(CCO)NH | 1 mM [U-100% 13C; U-100% 15N] BfmrC, 0.025 M Tris-HCl, 0.05 M KCl | 90% H2O/10% D2O | 0.05 | 6.5 | 1 atm | 273 | |
8 | 3D HBHA(CO)NH | 1 mM [U-100% 13C; U-100% 15N] BfmrC, 0.025 M Tris-HCl, 0.05 M KCl | 90% H2O/10% D2O | 0.05 | 6.5 | 1 atm | 273 | |
9 | 3D 1H-13C NOESY aliphatic | 1 mM [U-100% 13C] BfmrC, 0.025 M Tris-HCl, 0.05 M KCl | 100% D2O | 0.05 | 6.5 | 1 atm | 273 | |
10 | 3D 1H-13C NOESY aromatic | 1 mM [U-100% 13C] BfmrC, 0.025 M Tris-HCl, 0.05 M KCl | 100% D2O | 0.05 | 6.5 | 1 atm | 273 | |
11 | 3D 1H-15N NOESY | 1 mM [U-100% 13C; U-100% 15N] BfmrC, 0.025 M Tris-HCl, 0.05 M KCl | 90% H2O/10% D2O | 0.05 | 6.5 | 1 atm | 273 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 700 |
2 | Varian | INOVA | 600 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | NMRPipe |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | data analysis | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
2 | chemical shift assignment | Sparky | Goddard | |
3 | structure solution | Sparky | Goddard | |
4 | chemical shift assignment | Sparky | Guntert, Mumenthaler and Wuthrich | |
5 | structure solution | Sparky | Guntert, Mumenthaler and Wuthrich | |
6 | chemical shift assignment | Sparky | Goddard | |
7 | structure solution | Sparky | Goddard | |
8 | chemical shift assignment | Sparky | Guntert, Mumenthaler and Wuthrich | |
9 | structure solution | Sparky | Guntert, Mumenthaler and Wuthrich | |
10 | refinement | Amber | 12.0 | Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, and Kollman |