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NMR structure of cl-BABP/SS complexed with glycochenodeoxycholic and glycocholic acids
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 0.5 mM [U-99% 15N] protein, 0.5 mM Glycochenodeoxycholic acid, 0.75 mM Glycocholic acid 90% H2O/10% D2O 30 7.2 ambient 298 2 3D CBCA(CO)NH 0.5 mM [U-99% 13C; U-99% 15N] protein, 0.5 mM Glycochenodeoxycholic acid, 0.75 mM glycocholic acid 90% H2O/10% D2O 30 7.2 ambient 298 3 3D HNCACB 0.5 mM [U-99% 13C; U-99% 15N] protein, 0.5 mM Glycochenodeoxycholic acid, 0.75 mM glycocholic acid 90% H2O/10% D2O 30 7.2 ambient 298 4 3D HNCO 0.5 mM [U-99% 13C; U-99% 15N] protein, 0.5 mM Glycochenodeoxycholic acid, 0.75 mM glycocholic acid 90% H2O/10% D2O 30 7.2 ambient 298 5 3D HCCH-TOCSY 0.5 mM [U-99% 13C; U-99% 15N] protein, 0.5 mM Glycochenodeoxycholic acid, 0.75 mM glycocholic acid 100% D2O 30 7.2 ambient 298 6 3D 1H-15N NOESY 0.5 mM [U-99% 15N] protein, 0.5 mM Glycochenodeoxycholic acid, 0.75 mM Glycocholic acid 90% H2O/10% D2O 30 7.2 ambient 298 7 3D 1H-13C NOESY aliphatic 0.5 mM [U-99% 13C; U-99% 15N] protein, 0.5 mM Glycochenodeoxycholic acid, 0.75 mM glycocholic acid 90% H2O/10% D2O 30 7.2 ambient 298 8 3D 1H-13C NOESY aromatic 0.5 mM [U-99% 13C; U-99% 15N] protein, 0.5 mM Glycochenodeoxycholic acid, 0.75 mM glycocholic acid 90% H2O/10% D2O 30 7.2 ambient 298 9 3D F1-[13C]-filtered, F2-[13C]-separated, F3-[15N,13C]-edited NOESY-HSQC 0.5 mM [U-99% 13C; U-99% 15N] protein, 0.5 mM Glycochenodeoxycholic acid, 0.75 mM glycocholic acid 100% D2O 30 7.2 ambient 298 10 F1/F2-[15N,13C]-filtered NOESY 0.5 mM [U-99% 13C; U-99% 15N] protein, 0.5 mM Glycochenodeoxycholic acid, 0.75 mM glycocholic acid 100% D2O 30 7.2 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 600 2 Bruker DMX 500 3 Bruker AVANCE 900
NMR Refinement Method Details Software molecular dynamics REFINEMENT IN EXPLICIT SOLVENT X-PLOR NIH
NMR Ensemble Information Conformer Selection Criteria best HADDOCK score Conformers Calculated Total Number 50 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 structure solution X-PLOR NIH 2.26 Schwieters, Kuszewski, Tjandra and Clore 2 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 3 chemical shift assignment NMRView Johnson, One Moon Scientific 4 refinement HADDOCK 2.1 Alexandre Bonvin