2L46
C-terminal zinc finger of the HIVNCp7 with platinated DNA
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-1H TOCSY | 1 mM C-terminal zinc knuckle of the HIVNCp7, 1 mM DNA | 90% H2O/10% D2O | 6.0 | 5.7 | ambient | 298 | |
2 | 2D DQF-COSY | 1 mM C-terminal zinc knuckle of the HIVNCp7, 1 mM DNA | 90% H2O/10% D2O | 6.0 | 5.7 | ambient | 298 | |
3 | 2D 1H-1H NOESY | 1 mM C-terminal zinc knuckle of the HIVNCp7, 1 mM DNA | 90% H2O/10% D2O | 6.0 | 5.7 | ambient | 298 | |
4 | 2D 1H-15N HSQC | 1 mM C-terminal zinc knuckle of the HIVNCp7, 1 mM DNA | 90% H2O/10% D2O | 6.0 | 5.7 | ambient | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 600 |
NMR Refinement | ||
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Method | Details | Software |
DGSA-distance geometry simulated annealing | CYANA |
NMR Ensemble Information | |
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Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 21 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | refinement | CYANA | 2.1 | Guntert, Mumenthaler and Wuthrich |
2 | peak picking | Sparky | 3.114 | Goddard |
3 | chemical shift assignment | Sparky | 3.114 | Goddard |