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Solution structure of the complex of ubiquitin and the VHS domain of Stam2
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 250 uM [U-99% 15N] Ubiquitin protein, 250 uM [U-99% 15N] VHS domain of Stam2 90% H2O/10% D2O 20 6.8 ambient 288 2 15N R1 AND R2 250 uM [U-99% 15N] Ubiquitin protein, 250 uM [U-99% 15N] VHS domain of Stam2 90% H2O/10% D2O 20 6.8 ambient 288 3 15N{1H} NOE 250 uM [U-99% 15N] Ubiquitin protein, 250 uM [U-99% 15N] VHS domain of Stam2 90% H2O/10% D2O 20 6.8 ambient 288
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Varian INOVA 600 2 Bruker DRX 900
NMR Refinement Method Details Software simulated annealing, distance geometry CNS-HADDOCK
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 300 Conformers Submitted Total Number 10 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 structure solution CNS-HADDOCK 1.2 Brunger, Adams, Clore, Gros, Nilges, Read, Dominguez, Boelens, Bonvin 2 chemical shift assignment Sparky Goddard 3 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 4 refinement CNS-HADDOCK 1.2 Brunger, Adams, Clore, Gros, Nilges, Read, Dominguez, Boelens, Bonvin