2L0T
Solution structure of the complex of ubiquitin and the VHS domain of Stam2
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 250 uM [U-99% 15N] Ubiquitin protein, 250 uM [U-99% 15N] VHS domain of Stam2 | 90% H2O/10% D2O | 20 | 6.8 | ambient | 288 | |
2 | 15N R1 AND R2 | 250 uM [U-99% 15N] Ubiquitin protein, 250 uM [U-99% 15N] VHS domain of Stam2 | 90% H2O/10% D2O | 20 | 6.8 | ambient | 288 | |
3 | 15N{1H} NOE | 250 uM [U-99% 15N] Ubiquitin protein, 250 uM [U-99% 15N] VHS domain of Stam2 | 90% H2O/10% D2O | 20 | 6.8 | ambient | 288 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 600 |
2 | Bruker | DRX | 900 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing, distance geometry | CNS-HADDOCK |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 300 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | structure solution | CNS-HADDOCK | 1.2 | Brunger, Adams, Clore, Gros, Nilges, Read, Dominguez, Boelens, Bonvin |
2 | chemical shift assignment | Sparky | Goddard | |
3 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
4 | refinement | CNS-HADDOCK | 1.2 | Brunger, Adams, Clore, Gros, Nilges, Read, Dominguez, Boelens, Bonvin |