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Solution NMR structure of H2H3 domain of ovine prion protein (residues 167-234)
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 0.5-0.7 mM [U-100% 13C; U-100% 15N] H2H3-1, 10% D2O-2, 90% H2O-3, 5 mM sodium citrate-4 90% H2O/10% D2O 0.006 3.5 ambient 298 2 3D HNCA 0.5-0.7 mM [U-100% 13C; U-100% 15N] H2H3-1, 10% D2O-2, 90% H2O-3, 5 mM sodium citrate-4 90% H2O/10% D2O 0.006 3.5 ambient 298 3 3D HN(CO)CA 0.5-0.7 mM [U-100% 13C; U-100% 15N] H2H3-1, 10% D2O-2, 90% H2O-3, 5 mM sodium citrate-4 90% H2O/10% D2O 0.006 3.5 ambient 298 4 3D 1H-15N NOESY 0.5-0.7 mM [U-100% 13C; U-100% 15N] H2H3-1, 10% D2O-2, 90% H2O-3, 5 mM sodium citrate-4 90% H2O/10% D2O 0.006 3.5 ambient 298 5 3D C(CO)NH 0.5-0.7 mM [U-100% 13C; U-100% 15N] H2H3-1, 10% D2O-2, 90% H2O-3, 5 mM sodium citrate-4 90% H2O/10% D2O 0.006 3.5 ambient 298 6 3D HCCH-TOCSY 0.5-0.7 mM [U-100% 13C; U-100% 15N] H2H3-1, 10% D2O-2, 90% H2O-3, 5 mM sodium citrate-4 90% H2O/10% D2O 0.006 3.5 ambient 298 7 CBARO 0.5-0.7 mM [U-100% 13C; U-100% 15N] H2H3-1, 10% D2O-2, 90% H2O-3, 5 mM sodium citrate-4 90% H2O/10% D2O 0.006 3.5 ambient 298 8 2D 1H-1H TOCSY 0.5-0.7 mM [U-100% 13C; U-100% 15N] H2H3-1, 10% D2O-2, 90% H2O-3, 5 mM sodium citrate-4 90% H2O/10% D2O 0.006 3.5 ambient 298 9 2D 1H-13C HSQC 0.5-0.7 mM [U-100% 13C; U-100% 15N] H2H3-1, 10% D2O-2, 90% H2O-3, 5 mM sodium citrate-4 90% H2O/10% D2O 0.006 3.5 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 600 2 Varian INOVA 600
NMR Refinement Method Details Software molecular dynamics ARIA
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 50 Conformers Submitted Total Number 12 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 data analysis ARIA v2.2 Linge, O'Donoghue and Nilges 2 structure solution ARIA v2.2 Linge, O'Donoghue and Nilges 3 geometry optimization ARIA v2.2 Linge, O'Donoghue and Nilges 4 refinement ARIA v2.2 Linge, O'Donoghue and Nilges