2KTM

Solution NMR structure of H2H3 domain of ovine prion protein (residues 167-234)


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC0.5-0.7 mM [U-100% 13C; U-100% 15N] H2H3-1, 10% D2O-2, 90% H2O-3, 5 mM sodium citrate-490% H2O/10% D2O0.0063.5ambient298
23D HNCA0.5-0.7 mM [U-100% 13C; U-100% 15N] H2H3-1, 10% D2O-2, 90% H2O-3, 5 mM sodium citrate-490% H2O/10% D2O0.0063.5ambient298
33D HN(CO)CA0.5-0.7 mM [U-100% 13C; U-100% 15N] H2H3-1, 10% D2O-2, 90% H2O-3, 5 mM sodium citrate-490% H2O/10% D2O0.0063.5ambient298
43D 1H-15N NOESY0.5-0.7 mM [U-100% 13C; U-100% 15N] H2H3-1, 10% D2O-2, 90% H2O-3, 5 mM sodium citrate-490% H2O/10% D2O0.0063.5ambient298
53D C(CO)NH0.5-0.7 mM [U-100% 13C; U-100% 15N] H2H3-1, 10% D2O-2, 90% H2O-3, 5 mM sodium citrate-490% H2O/10% D2O0.0063.5ambient298
63D HCCH-TOCSY0.5-0.7 mM [U-100% 13C; U-100% 15N] H2H3-1, 10% D2O-2, 90% H2O-3, 5 mM sodium citrate-490% H2O/10% D2O0.0063.5ambient298
7CBARO0.5-0.7 mM [U-100% 13C; U-100% 15N] H2H3-1, 10% D2O-2, 90% H2O-3, 5 mM sodium citrate-490% H2O/10% D2O0.0063.5ambient298
82D 1H-1H TOCSY0.5-0.7 mM [U-100% 13C; U-100% 15N] H2H3-1, 10% D2O-2, 90% H2O-3, 5 mM sodium citrate-490% H2O/10% D2O0.0063.5ambient298
92D 1H-13C HSQC0.5-0.7 mM [U-100% 13C; U-100% 15N] H2H3-1, 10% D2O-2, 90% H2O-3, 5 mM sodium citrate-490% H2O/10% D2O0.0063.5ambient298
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE600
2VarianINOVA600
NMR Refinement
MethodDetailsSoftware
molecular dynamicsARIA
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number50
Conformers Submitted Total Number12
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1data analysisARIAv2.2Linge, O'Donoghue and Nilges
2structure solutionARIAv2.2Linge, O'Donoghue and Nilges
3geometry optimizationARIAv2.2Linge, O'Donoghue and Nilges
4refinementARIAv2.2Linge, O'Donoghue and Nilges