2KAT
Solution structure of protein BPP2914 from Bordetella parapertussis. Northeast Structural Genomics Consortium target BpR206
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 0.3 mM [U-5% 13C; U-100% 15N] protein | 90% H2O/10% D2O | 0.2 | 4.5 | ambient | 278 | |
2 | 2D 1H-13C HSQC | 0.3 mM [U-5% 13C; U-100% 15N] protein | 90% H2O/10% D2O | 0.2 | 4.5 | ambient | 278 | |
3 | 3D CBCA(CO)NH | 0.3 mM [U-5% 13C; U-100% 15N] protein | 90% H2O/10% D2O | 0.2 | 4.5 | ambient | 278 | |
4 | 3D HNCACB | 0.3 mM [U-5% 13C; U-100% 15N] protein | 90% H2O/10% D2O | 0.2 | 4.5 | ambient | 278 | |
5 | 3D HBHA(CO)NH | 0.3 mM [U-5% 13C; U-100% 15N] protein | 90% H2O/10% D2O | 0.2 | 4.5 | ambient | 278 | |
6 | 3D HCCH-TOCSY | 0.3 mM [U-5% 13C; U-100% 15N] protein | 90% H2O/10% D2O | 0.2 | 4.5 | ambient | 278 | |
7 | (4,3)D GFT HCCH-COSY | 0.3 mM [U-5% 13C; U-100% 15N] protein | 90% H2O/10% D2O | 0.2 | 4.5 | ambient | 278 | |
8 | 3D, 15N-13C RESOLVED SIMULTANIOUS NOESY | 0.3 mM [U-5% 13C; U-100% 15N] protein | 90% H2O/10% D2O | 0.2 | 4.5 | ambient | 278 | |
9 | 3D HNCO | 0.3 mM [U-5% 13C; U-100% 15N] protein | 90% H2O/10% D2O | 0.2 | 4.5 | ambient | 278 | |
10 | 2D 1H-13C HSQC | 0.3 mM [U-100% 13C; U-100% 15N] protein | 90% H2O/10% D2O | 0.2 | 4.5 | ambient | 278 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 600 |
2 | Varian | INOVA | 750 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | CNS |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | refinement | CNS | Brunger, Adams, Clore, Gros, Nilges and Read | |
2 | structure solution | CYANA | Guntert, Mumenthaler and Wuthrich | |
3 | chemical shift assignment | AutoAssign | Zimmerman, Moseley, Kulikowski and Montelione | |
4 | structure solution | AutoStructure | Huang, Tejero, Powers and Montelione | |
5 | peak picking | XEASY | Bartels et al. | |
6 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
7 | data analysis | PSVS | Bhattacharya and Montelione |