2K6I
The domain features of the peripheral stalk subunit H of the methanogenic A1AO ATP synthase and the NMR solution structure of H1-47
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D 1H-15N NOESY | 0.5-1 mM [U-99% 13C; U-99% 15N] H1-47 subunit A ATP synthase, 0.1 % sodium azide | 90% H2O/10% D2O | 6.5 | AMBIENT | 288 | ||
2 | 3D 1H-13C NOESY | 0.5-1 mM [U-99% 13C; U-99% 15N] H1-47 subunit A ATP synthase, 0.1 % sodium azide | 90% H2O/10% D2O | 6.5 | AMBIENT | 288 | ||
3 | 3D CBCA(CO)NH | 0.5-1 mM [U-99% 13C; U-99% 15N] H1-47 subunit A ATP synthase, 0.1 % sodium azide | 90% H2O/10% D2O | 6.5 | AMBIENT | 288 | ||
4 | 3D HNCACB | 0.5-1 mM [U-99% 13C; U-99% 15N] H1-47 subunit A ATP synthase, 0.1 % sodium azide | 90% H2O/10% D2O | 6.5 | AMBIENT | 288 | ||
5 | 3D C(CO)NH | 0.5-1 mM [U-99% 13C; U-99% 15N] H1-47 subunit A ATP synthase, 0.1 % sodium azide | 90% H2O/10% D2O | 6.5 | AMBIENT | 288 | ||
6 | 3D H(CCO)NH | 0.5-1 mM [U-99% 13C; U-99% 15N] H1-47 subunit A ATP synthase, 0.1 % sodium azide | 90% H2O/10% D2O | 6.5 | AMBIENT | 288 | ||
7 | 2D 1H-15N HSQC | 0.5-1 mM [U-99% 13C; U-99% 15N] H1-47 subunit A ATP synthase, 0.1 % sodium azide | 90% H2O/10% D2O | 6.5 | AMBIENT | 288 | ||
8 | 2D 1H-13C HSQC | 0.5-1 mM [U-99% 13C; U-99% 15N] H1-47 subunit A ATP synthase, 0.1 % sodium azide | 90% H2O/10% D2O | 6.5 | AMBIENT | 288 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 600 |
NMR Refinement | ||
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Method | Details | Software |
torsion angle dynamics | Sparky |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the least restraint violations |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | peak picking | Sparky | 3.113 | Goddard, T.D. et al. |
2 | chemical shift assignment | Sparky | 3.113 | Goddard, T.D. et al. |
3 | structure solution | CYANA | 3.0 | Guntert, P. et al. |
4 | collection | TopSpin | 1.3 | Bruker Biospin |
5 | processing | TopSpin | 1.3 | Bruker Biospin |
6 | torsional angle calculation | TALOS | Cornilescu, G. et al. | |
7 | refinement | CYANA | 3.0 | Guntert, P. et al. |