2JZ7
Solution NMR structure of selenium-binding protein from Methanococcus Vannielii
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D_15N-separated NOESY | 0.1-1 mM [U-100% 15N] protein | 90% H2O/10% D2O | 0 | 7.1 | ambient | 318 | |
2 | 4D_13C/15N-separated_NOESY | 0.1-1 mM [U-100% 13C; U-100% 15N] protein | 90% H2O/10% D2O | 0 | 7.1 | ambient | 318 | |
3 | 4D_13C/13C-separated_NOESY | 0.1-1 mM [U-100% 13C; U-100% 15N] protein | 100% D2O | 0 | 7.1 | ambient | 318 | |
4 | 3D CT-HNCO | 0.1-1 mM [U-13C; U-15N; U-2H] protein | 90% H2O/10% D2O | 0 | 7.1 | ambient | 318 | |
5 | 3D CT-HNCO | 0.1-1 mM [U-13C; U-15N; U-2H] protein, 12 mg/mL Pf1 phage | 90% H2O/10% D2O | 0 | 7.1 | ambient | 318 | |
6 | BRCT-3DJ | 0.1-1 mM [U-100% 13C; U-100% 15N] protein | 100% D2O | 0 | 7.1 | ambient | 318 | |
7 | BRCT-3DJ | 0.1-1 mM [U-100% 13C; U-100% 15N] protein, 12 mg/mL Pf1 phage | 100% D2O | 0 | 7.1 | ambient | 318 | |
8 | HNCO TROSY | 0.1-1 mM [U-100% 13C; U-100% 15N] protein | 90% H2O/10% D2O | 0 | 7.1 | ambient | 318 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DMX | 600 |
2 | Bruker | DMX | 800 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
DGSA-distance geometry simulated annealing | XwinNMR |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | collection | XwinNMR | Bruker Biospin | |
2 | processing | NMRPipe | Delaglio, F. et al. | |
3 | data analysis | PIPP | Garrett, D. et al. | |
4 | refinement | X-PLOR NIH | Schwieters, C.D. et al. | |
5 | structure solution | X-PLOR NIH | Schwieters, C.D. et al. |