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Solution structures of the envelope protein domain III from the dengue-2 virus
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 1-5 mM EDTA, 1-5 mM DTT, 1 mM sodium azide 90% H2O/10% D2O 0.31 7.4 ambient 298 2 2D 1H-13C HSQC 1-5 mM EDTA, 1-5 mM DTT, 1 mM sodium azide 90% H2O/10% D2O 0.31 7.4 ambient 298 3 3D 1H-15N NOESY 1-5 mM EDTA, 1-5 mM DTT, 1 mM sodium azide 90% H2O/10% D2O 0.31 7.4 ambient 298 4 3D 1H-13C NOESY 1-5 mM EDTA, 1-5 mM DTT, 1 mM sodium azide 90% H2O/10% D2O 0.31 7.4 ambient 298 5 3D H(CCO)NH 1-5 mM EDTA, 1-5 mM DTT, 1 mM sodium azide 90% H2O/10% D2O 0.31 7.4 ambient 298 6 3D HNCACB 1-5 mM EDTA, 1-5 mM DTT, 1 mM sodium azide 90% H2O/10% D2O 0.31 7.4 ambient 298 7 3D CBCA(CO)NH 1-5 mM EDTA, 1-5 mM DTT, 1 mM sodium azide 90% H2O/10% D2O 0.31 7.4 ambient 298 8 3D HBHA(CO)NH 1-5 mM EDTA, 1-5 mM DTT, 1 mM sodium azide 90% H2O/10% D2O 0.31 7.4 ambient 298 9 3D HCCH-TOCSY 1-5 mM EDTA, 1-5 mM DTT, 1 mM sodium azide 90% H2O/10% D2O 0.31 7.4 ambient 298 10 3D HNCA 1-5 mM EDTA, 1-5 mM DTT, 1 mM sodium azide 90% H2O/10% D2O 0.31 7.4 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker DRX 600
NMR Refinement Method Details Software simulated annealing XPLOR-NIH
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (closest to the average)
Computation: NMR Software # Classification Version Software Name Author 1 structure solution XPLOR-NIH Schwieters, Kuszewski, Tjandra and Clore 2 refinement XPLOR-NIH Schwieters, Kuszewski, Tjandra and Clore 3 data analysis Sparky Goddard 4 processing XwinNMR Bruker Biospin 5 collection TALOS Cornilescu, Delaglio and Bax 6 data analysis ProcheckNMR Laskowski and MacArthur 7 data analysis MOLMOL Koradi, Billeter and Wuthrich