2JSF | pdb_00002jsf

Solution structures of the envelope protein domain III from the dengue-2 virus

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	1-5 mM EDTA, 1-5 mM DTT, 1 mM sodium azide	90% H2O/10% D2O	0.31	7.4	ambient	298
2	2D 1H-13C HSQC	1-5 mM EDTA, 1-5 mM DTT, 1 mM sodium azide	90% H2O/10% D2O	0.31	7.4	ambient	298
3	3D 1H-15N NOESY	1-5 mM EDTA, 1-5 mM DTT, 1 mM sodium azide	90% H2O/10% D2O	0.31	7.4	ambient	298
4	3D 1H-13C NOESY	1-5 mM EDTA, 1-5 mM DTT, 1 mM sodium azide	90% H2O/10% D2O	0.31	7.4	ambient	298
5	3D H(CCO)NH	1-5 mM EDTA, 1-5 mM DTT, 1 mM sodium azide	90% H2O/10% D2O	0.31	7.4	ambient	298
6	3D HNCACB	1-5 mM EDTA, 1-5 mM DTT, 1 mM sodium azide	90% H2O/10% D2O	0.31	7.4	ambient	298
7	3D CBCA(CO)NH	1-5 mM EDTA, 1-5 mM DTT, 1 mM sodium azide	90% H2O/10% D2O	0.31	7.4	ambient	298
8	3D HBHA(CO)NH	1-5 mM EDTA, 1-5 mM DTT, 1 mM sodium azide	90% H2O/10% D2O	0.31	7.4	ambient	298
9	3D HCCH-TOCSY	1-5 mM EDTA, 1-5 mM DTT, 1 mM sodium azide	90% H2O/10% D2O	0.31	7.4	ambient	298
10	3D HNCA	1-5 mM EDTA, 1-5 mM DTT, 1 mM sodium azide	90% H2O/10% D2O	0.31	7.4	ambient	298

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	DRX	600

NMR Refinement
Method	Details	Software
simulated annealing		XPLOR-NIH

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	100
Conformers Submitted Total Number	20
Representative Model	1 (closest to the average)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	structure solution	XPLOR-NIH		Schwieters, Kuszewski, Tjandra and Clore
2	refinement	XPLOR-NIH		Schwieters, Kuszewski, Tjandra and Clore
3	data analysis	Sparky		Goddard
4	processing	XwinNMR		Bruker Biospin
5	collection	TALOS		Cornilescu, Delaglio and Bax
6	data analysis	ProcheckNMR		Laskowski and MacArthur
7	data analysis	MOLMOL		Koradi, Billeter and Wuthrich