2JO7
Solution structure of the adhesion protein Bd37 from Babesia divergens
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 0.8 mM [U-99% 15N] delta-Bd37, 95% H2O/5% D2 | 95% H2O/5% D2O | 50 | 6.8 | ambient | 310 | |
2 | 3D 1H-15N NOESY | 0.8 mM [U-99% 15N] delta-Bd37, 95% H2O/5% D2 | 95% H2O/5% D2O | 50 | 6.8 | ambient | 310 | |
3 | 3D 1H-13C NOESY | 0.8 mM [U-99% 13C; U-99% 15N] delta-Bd37 | 95% H2O/5% D2O | 50 | 6.8 | ambient | 310 | |
4 | 3D 1H-15N NOESY | 0.8 mM [U-99% 15N] delta-Bd37, 95% H2O/5% D2 | 95% H2O/5% D2O | 50 | 6.8 | ambient | 310 | |
5 | (in-phase/antiphase) [15N-1H] HSQC | 0.8 mM [U-99% 15N] delta-Bd37, 95% H2O/5% D2 | 95% H2O/5% D2O | 50 | 6.8 | ambient | 310 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
molecular dynamics | Use of 1DNH residual dipolar couplings values in order to improve local geometry | PREDITOR |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (closest to the average) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | geometry optimization | PREDITOR | 1 | Berjanskii |
2 | data analysis | CINDY | PADILLA | |
3 | structure solution | CYANA | Guntert, Mumenthaler and Wuthrich | |
4 | refinement | Amber | 8 | Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, and Koll |
5 | processing | Gifa | 4 | Delsuc |
6 | geometry optimization | TALOS | Cornilescu, Delaglio and Bax |