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Solution structure of the adhesion protein Bd37 from Babesia divergens
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 0.8 mM [U-99% 15N] delta-Bd37, 95% H2O/5% D2 95% H2O/5% D2O 50 6.8 ambient 310 2 3D 1H-15N NOESY 0.8 mM [U-99% 15N] delta-Bd37, 95% H2O/5% D2 95% H2O/5% D2O 50 6.8 ambient 310 3 3D 1H-13C NOESY 0.8 mM [U-99% 13C; U-99% 15N] delta-Bd37 95% H2O/5% D2O 50 6.8 ambient 310 4 3D 1H-15N NOESY 0.8 mM [U-99% 15N] delta-Bd37, 95% H2O/5% D2 95% H2O/5% D2O 50 6.8 ambient 310 5 (in-phase/antiphase) [15N-1H] HSQC 0.8 mM [U-99% 15N] delta-Bd37, 95% H2O/5% D2 95% H2O/5% D2O 50 6.8 ambient 310
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 600
NMR Refinement Method Details Software molecular dynamics Use of 1DNH residual dipolar couplings values in order to improve local geometry PREDITOR
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 100 Conformers Submitted Total Number 10 Representative Model 1 (closest to the average)
Computation: NMR Software # Classification Version Software Name Author 1 geometry optimization PREDITOR 1 Berjanskii 2 data analysis CINDY PADILLA 3 structure solution CYANA Guntert, Mumenthaler and Wuthrich 4 refinement Amber 8 Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, and Koll 5 processing Gifa 4 Delsuc 6 geometry optimization TALOS Cornilescu, Delaglio and Bax