☰ Navigation Tabs
Structure of a Streptococcus pneumoniae fucose binding module, SpX-3
Crystallization Crystal Properties Matthews coefficient Solvent content 1.98 37.38
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 30.713 α = 90 b = 41.159 β = 90 c = 108.139 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 113 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 20 99.6 0.07 10 4.8 12615 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.86 100 0.4 3.3 4.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.8 20 12615 653 99.6 0.213 0.21 0.2098 0.276 0.2721 RANDOM 29.59
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.68 -1.55 -1.13
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.971 r_scangle_it 4.383 r_scbond_it 2.759 r_angle_refined_deg 1.801 r_mcangle_it 1.713 r_mcbond_it 1.117 r_symmetry_hbond_refined 0.331 r_symmetry_vdw_refined 0.301 r_nbd_refined 0.206 r_xyhbond_nbd_refined 0.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.971 r_scangle_it 4.383 r_scbond_it 2.759 r_angle_refined_deg 1.801 r_mcangle_it 1.713 r_mcbond_it 1.117 r_symmetry_hbond_refined 0.331 r_symmetry_vdw_refined 0.301 r_nbd_refined 0.206 r_xyhbond_nbd_refined 0.16 r_chiral_restr 0.124 r_bond_refined_d 0.02 r_gen_planes_refined 0.009 r_bond_other_d r_angle_other_deg r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1089 Nucleic Acid Atoms Solvent Atoms 129 Heterogen Atoms 7
Software Software Software Name Purpose REFMAC refinement MOLREP phasing