Experiment: 2J22

 2J22

Structure of a Streptococcus pneumoniae fucose binding module, SpX-3


X-RAY DIFFRACTION

Crystallization

Crystal Properties
Matthews coefficientSolvent content
1.9837.38

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 30.713α = 90
b = 41.159β = 90
c = 108.139γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray113 MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODE

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.82099.60.07104.8126152
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.81.861000.43.34.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.8201261565399.60.2130.210.276RANDOM29.59
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
2.68-1.55-1.13
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.971
r_scangle_it4.383
r_scbond_it2.759
r_angle_refined_deg1.801
r_mcangle_it1.713
r_mcbond_it1.117
r_symmetry_hbond_refined0.331
r_symmetry_vdw_refined0.301
r_nbd_refined0.206
r_xyhbond_nbd_refined0.16
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1089
Nucleic Acid Atoms
Solvent Atoms129
Heterogen Atoms7

Software

Software
Software NamePurpose
REFMACrefinement
MOLREPphasing