☰ Navigation Tabs
Structure of the haem-chaperone Proteobacteria-protein HemS
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2J0P PDB ENTRY 2J0P
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 100MM BICINE PH 9, 2.45M AMMONIUM SULPHATE, 5% PEG 400
Crystal Properties Matthews coefficient Solvent content 1.92 35.55
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 62.022 α = 90 b = 68.269 β = 90 c = 73.62 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 98 CCD ADSC CCD MIRROR 2006-03-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 30 100 0.09 17.9 7.8 25260 2 17.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 2 100 0.35 5.2 8.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2J0P 1.9 50.06 23971 1289 99.9 0.191 0.189 0.2009 0.233 0.2428 RANDOM 15.32
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.66 1.78 -1.12
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.275 r_dihedral_angle_3_deg 15.637 r_dihedral_angle_4_deg 8.076 r_dihedral_angle_1_deg 6.931 r_scangle_it 2.836 r_scbond_it 1.809 r_angle_refined_deg 1.367 r_mcangle_it 1.073 r_mcbond_it 0.864 r_nbtor_refined 0.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.275 r_dihedral_angle_3_deg 15.637 r_dihedral_angle_4_deg 8.076 r_dihedral_angle_1_deg 6.931 r_scangle_it 2.836 r_scbond_it 1.809 r_angle_refined_deg 1.367 r_mcangle_it 1.073 r_mcbond_it 0.864 r_nbtor_refined 0.3 r_symmetry_vdw_refined 0.272 r_nbd_refined 0.203 r_chiral_restr 0.183 r_symmetry_hbond_refined 0.135 r_xyhbond_nbd_refined 0.129 r_bond_refined_d 0.011 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2666 Nucleic Acid Atoms Solvent Atoms 134 Heterogen Atoms 86
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHASER phasing