X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
otherIn-House Strcture

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP4.82910.1M Sodium Acetate pH 4.8, 7% NaCl, 25% Ethylene glycol, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties
Matthews coefficientSolvent content
2.0138.74

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 78.827α = 90
b = 78.827β = 90
c = 37.053γ = 90
Symmetry
Space GroupP 43 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 4mirrors2006-02-15MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-30.931ESRFID14-3

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.62955.7399.80.0520.05210.27.81514115141-325.14
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.6291.661000.8690.8692.817.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONFOURIER SYNTHESISTHROUGHOUTIn-House Strcture1.6355.73151001434275899.780.150210.146790.2203RANDOM30.484
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.3-0.30.6
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.958
r_dihedral_angle_4_deg20.892
r_dihedral_angle_3_deg13.71
r_sphericity_free12.758
r_scangle_it9.809
r_sphericity_bonded8.233
r_scbond_it7.49
r_mcangle_it5.787
r_dihedral_angle_1_deg5.75
r_mcbond_it4.185
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.958
r_dihedral_angle_4_deg20.892
r_dihedral_angle_3_deg13.71
r_sphericity_free12.758
r_scangle_it9.809
r_sphericity_bonded8.233
r_scbond_it7.49
r_mcangle_it5.787
r_dihedral_angle_1_deg5.75
r_mcbond_it4.185
r_rigid_bond_restr4.133
r_angle_refined_deg1.275
r_symmetry_vdw_refined0.321
r_nbtor_refined0.302
r_nbd_refined0.247
r_symmetry_hbond_refined0.242
r_xyhbond_nbd_refined0.198
r_chiral_restr0.096
r_metal_ion_refined0.02
r_bond_refined_d0.009
r_gen_planes_refined0.004
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1001
Nucleic Acid Atoms
Solvent Atoms81
Heterogen Atoms44

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
DENZOdata reduction
SCALEPACKdata scaling
REFMACphasing