☰ Navigation Tabs
Crystal structure Analysis of Hen Egg White Lyszoyme
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other In-House Strcture
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.8 291 0.1M Sodium Acetate pH 4.8, 7% NaCl, 25% Ethylene glycol, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.01 38.74
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 78.827 α = 90 b = 78.827 β = 90 c = 37.053 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 mirrors 2006-02-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-3 0.931 ESRF ID14-3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.629 55.73 99.8 0.052 0.052 10.2 7.8 15141 15141 -3 25.14
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.629 1.66 100 0.869 0.869 2.81 7.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT In-House Strcture 1.63 55.73 15100 14342 758 99.78 0.15021 0.14679 0.147 0.2203 0.2154 RANDOM 30.484
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.3 -0.3 0.6
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.958 r_dihedral_angle_4_deg 20.892 r_dihedral_angle_3_deg 13.71 r_sphericity_free 12.758 r_scangle_it 9.809 r_sphericity_bonded 8.233 r_scbond_it 7.49 r_mcangle_it 5.787 r_dihedral_angle_1_deg 5.75 r_mcbond_it 4.185
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.958 r_dihedral_angle_4_deg 20.892 r_dihedral_angle_3_deg 13.71 r_sphericity_free 12.758 r_scangle_it 9.809 r_sphericity_bonded 8.233 r_scbond_it 7.49 r_mcangle_it 5.787 r_dihedral_angle_1_deg 5.75 r_mcbond_it 4.185 r_rigid_bond_restr 4.133 r_angle_refined_deg 1.275 r_symmetry_vdw_refined 0.321 r_nbtor_refined 0.302 r_nbd_refined 0.247 r_symmetry_hbond_refined 0.242 r_xyhbond_nbd_refined 0.198 r_chiral_restr 0.096 r_metal_ion_refined 0.02 r_bond_refined_d 0.009 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1001 Nucleic Acid Atoms Solvent Atoms 81 Heterogen Atoms 44
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction DENZO data reduction SCALEPACK data scaling REFMAC phasing