☰ Navigation Tabs
Novel bacterial methionine aminopeptidase inhibitors
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2GG2 PDB ENTRY 2GG2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 298 10 mg/ml protein, 25% PEG 8000, 100 mM TRIS-HCl, 1-5 mM inhibitor, batch, pH 7.0, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.09 41.21
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 38.776 α = 90 b = 61.457 β = 107.67 c = 53.902 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD BRUKER SMART 6000 2002-01-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE MACSCIENCE 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.12 31.67 94.4 0.042 14.2 2.2 12996 12996
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.12 2.25 74.3 0.294 3.9 1.4 1645
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2GG2 2.12 31.67 12996 12996 649 94.46 0.2 0.195 0.195 0.3 0.2825 RANDOM 34.273
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.76 0.01 1.08 1.68
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.079 r_dihedral_angle_4_deg 23.319 r_dihedral_angle_3_deg 20.507 r_dihedral_angle_1_deg 9.401 r_scangle_it 6.701 r_scbond_it 4.737 r_mcangle_it 3.041 r_angle_refined_deg 2.387 r_mcbond_it 1.853 r_symmetry_hbond_refined 0.434
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.079 r_dihedral_angle_4_deg 23.319 r_dihedral_angle_3_deg 20.507 r_dihedral_angle_1_deg 9.401 r_scangle_it 6.701 r_scbond_it 4.737 r_mcangle_it 3.041 r_angle_refined_deg 2.387 r_mcbond_it 1.853 r_symmetry_hbond_refined 0.434 r_nbtor_refined 0.328 r_nbd_refined 0.278 r_xyhbond_nbd_refined 0.276 r_metal_ion_refined 0.265 r_symmetry_vdw_refined 0.213 r_chiral_restr 0.159 r_bond_refined_d 0.015 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2043 Nucleic Acid Atoms Solvent Atoms 199 Heterogen Atoms 22
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction SCALEPACK data scaling AMoRE phasing