Experiment: 2GG5

X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	2GG2	PDB ENTRY 2GG2

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1		7	298	10 mg/ml protein, 25% PEG 8000, 100 mM TRIS-HCl, 1-5 mM inhibitor, batch, pH 7.0, temperature 298K

Crystal Properties
Matthews coefficient	Solvent content
2.09	41.21

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 38.776	α = 90
b = 61.457	β = 107.67
c = 53.902	γ = 90

Symmetry
Space Group	P 1 21 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	CCD	BRUKER SMART 6000		2002-01-01	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	ROTATING ANODE	MACSCIENCE	1.5418

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.12	31.67	94.4	0.042	14.2	2.2	12996	12996

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
	2.12	2.25	74.3		0.294	3.9	1.4	1645

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (All)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Factor (Observed)	R-Work	R-Free	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	PDB ENTRY 2GG2	2.12	31.67	12996	12996	649	94.46	0.2	0.195	0.195	0.3	RANDOM	34.273

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-2.76		0.01	1.08		1.68

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	40.079
r_dihedral_angle_4_deg	23.319
r_dihedral_angle_3_deg	20.507
r_dihedral_angle_1_deg	9.401
r_scangle_it	6.701
r_scbond_it	4.737
r_mcangle_it	3.041
r_angle_refined_deg	2.387
r_mcbond_it	1.853
r_symmetry_hbond_refined	0.434

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	40.079
r_dihedral_angle_4_deg	23.319
r_dihedral_angle_3_deg	20.507
r_dihedral_angle_1_deg	9.401
r_scangle_it	6.701
r_scbond_it	4.737
r_mcangle_it	3.041
r_angle_refined_deg	2.387
r_mcbond_it	1.853
r_symmetry_hbond_refined	0.434
r_nbtor_refined	0.328
r_nbd_refined	0.278
r_xyhbond_nbd_refined	0.276
r_metal_ion_refined	0.265
r_symmetry_vdw_refined	0.213
r_chiral_restr	0.159
r_bond_refined_d	0.015
r_gen_planes_refined	0.005

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	2043
Nucleic Acid Atoms
Solvent Atoms	199
Heterogen Atoms	22

Software

Software
Software Name	Purpose
REFMAC	refinement
PDB_EXTRACT	data extraction
SCALEPACK	data scaling
AMoRE	phasing

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.