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Phosphomannomutase/Phosphoglucomutase from Pseudomonas aeruginosa with alpha-D-glucose 1,6-bisphosphate bound
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1K35 PDB entry 1K35
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7.5 298 50-60% sat Na K tartrate, .1 M Na Hepes pH 7.5
seeding used, VAPOR DIFFUSION, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.34 47.53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 70.865 α = 90 b = 72.849 β = 90 c = 91.258 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2004-08-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97934 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 50 99.7 0.076 8.2 37917 32729
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.07 100 0.47 8.1 3246
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 1K35 2 50 32598 32463 1655 99.6 0.186 0.2526 0.183 0.1966 0.24 0.2516 RANDOM 33.743
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.56 -0.05 1.61
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.011 r_dihedral_angle_4_deg 15.745 r_dihedral_angle_3_deg 13.853 r_dihedral_angle_1_deg 5.678 r_scangle_it 2.648 r_scbond_it 1.853 r_angle_refined_deg 1.18 r_angle_other_deg 0.773 r_mcangle_it 0.736 r_mcbond_it 0.618
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.011 r_dihedral_angle_4_deg 15.745 r_dihedral_angle_3_deg 13.853 r_dihedral_angle_1_deg 5.678 r_scangle_it 2.648 r_scbond_it 1.853 r_angle_refined_deg 1.18 r_angle_other_deg 0.773 r_mcangle_it 0.736 r_mcbond_it 0.618 r_symmetry_vdw_other 0.239 r_nbd_refined 0.202 r_nbd_other 0.177 r_nbtor_refined 0.17 r_metal_ion_refined 0.167 r_xyhbond_nbd_refined 0.164 r_symmetry_hbond_refined 0.159 r_symmetry_vdw_refined 0.146 r_mcbond_other 0.104 r_nbtor_other 0.08 r_chiral_restr 0.067 r_bond_refined_d 0.009 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3372 Nucleic Acid Atoms Solvent Atoms 296 Heterogen Atoms 21
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction