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Crystal structure of MtnX phosphatase from Bacillus Subtilis at 2.00 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION,SITTING DROP,NANODROP 8.5 277 0.2M NaOAc, 30.0% PEG-4000, 0.1M TRIS, pH 8.5, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.42 48.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 59.013 α = 90 b = 43.104 β = 98.91 c = 109.553 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2005-10-12 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 1.019867, 0.979741 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 22.95 98 0.061 0.061 8.1 3.9 36411
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.05 97 97 0.418 0.418 1.8 3.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2 22.95 34588 1810 97.55 0.163 0.16289 0.16 0.1719 0.217 0.2262 RANDOM 35.926
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.08 0.12 2.15 -2.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.107 r_dihedral_angle_3_deg 14.817 r_dihedral_angle_4_deg 13.917 r_scangle_it 7.524 r_dihedral_angle_1_deg 6.028 r_scbond_it 5.522 r_mcangle_it 2.859 r_mcbond_it 1.944 r_angle_refined_deg 1.48 r_angle_other_deg 0.857
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.107 r_dihedral_angle_3_deg 14.817 r_dihedral_angle_4_deg 13.917 r_scangle_it 7.524 r_dihedral_angle_1_deg 6.028 r_scbond_it 5.522 r_mcangle_it 2.859 r_mcbond_it 1.944 r_angle_refined_deg 1.48 r_angle_other_deg 0.857 r_mcbond_other 0.656 r_symmetry_vdw_other 0.252 r_nbd_refined 0.224 r_nbtor_refined 0.187 r_nbd_other 0.182 r_xyhbond_nbd_refined 0.168 r_symmetry_hbond_refined 0.16 r_symmetry_vdw_refined 0.112 r_chiral_restr 0.093 r_nbtor_other 0.084 r_bond_refined_d 0.018 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3613 Nucleic Acid Atoms Solvent Atoms 362 Heterogen Atoms 44
Software Software Software Name Purpose REFMAC refinement SCALA data scaling PDB_EXTRACT data extraction MOSFLM data reduction CCP4 data scaling SOLVE phasing