2EV4

Structure of Rv1264N, the regulatory domain of the mycobacterial adenylyl cylcase Rv1264, with a salt precipitant


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP8.5291ammonium sulphate, TRIS, lithium sulphate, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties
Matthews coefficientSolvent content
2.244.3

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 120.081α = 90
b = 53.916β = 132.34
c = 89.814γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 42003-09-11MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-40.9393ESRFID14-4

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.283096.30.05521.14.9196291889352.2
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.282.3696.90.132.33.41948

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.2830195691786896196.140.220690.220690.218180.26616RANDOM55.303
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.52-1.050.6-0.49
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.714
r_dihedral_angle_4_deg18.253
r_dihedral_angle_3_deg14.961
r_dihedral_angle_1_deg4.815
r_scangle_it3.028
r_scbond_it2.035
r_angle_refined_deg1.293
r_mcangle_it1.124
r_mcbond_it0.972
r_angle_other_deg0.926
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.714
r_dihedral_angle_4_deg18.253
r_dihedral_angle_3_deg14.961
r_dihedral_angle_1_deg4.815
r_scangle_it3.028
r_scbond_it2.035
r_angle_refined_deg1.293
r_mcangle_it1.124
r_mcbond_it0.972
r_angle_other_deg0.926
r_symmetry_hbond_refined0.574
r_symmetry_vdw_other0.405
r_symmetry_vdw_refined0.357
r_nbd_refined0.211
r_nbd_other0.198
r_xyhbond_nbd_refined0.178
r_nbtor_refined0.163
r_mcbond_other0.158
r_nbtor_other0.083
r_chiral_restr0.073
r_bond_refined_d0.013
r_gen_planes_refined0.004
r_bond_other_d0.002
r_gen_planes_other0.001
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2817
Nucleic Acid Atoms
Solvent Atoms111
Heterogen Atoms41

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling
CCP4phasing