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Structure of Rv1264N, the regulatory domain of the mycobacterial adenylyl cylcase Rv1264, with a salt precipitant
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 291 ammonium sulphate, TRIS, lithium sulphate, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.2 44.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 120.081 α = 90 b = 53.916 β = 132.34 c = 89.814 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2003-09-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 0.9393 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.28 30 96.3 0.055 21.1 4.9 19629 18893 52.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.28 2.36 96.9 0.13 2.3 3.4 1948
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.28 30 19569 17868 961 96.14 0.22069 0.22069 0.21818 0.2243 0.26616 0.2657 RANDOM 55.303
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.52 -1.05 0.6 -0.49
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.714 r_dihedral_angle_4_deg 18.253 r_dihedral_angle_3_deg 14.961 r_dihedral_angle_1_deg 4.815 r_scangle_it 3.028 r_scbond_it 2.035 r_angle_refined_deg 1.293 r_mcangle_it 1.124 r_mcbond_it 0.972 r_angle_other_deg 0.926
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.714 r_dihedral_angle_4_deg 18.253 r_dihedral_angle_3_deg 14.961 r_dihedral_angle_1_deg 4.815 r_scangle_it 3.028 r_scbond_it 2.035 r_angle_refined_deg 1.293 r_mcangle_it 1.124 r_mcbond_it 0.972 r_angle_other_deg 0.926 r_symmetry_hbond_refined 0.574 r_symmetry_vdw_other 0.405 r_symmetry_vdw_refined 0.357 r_nbd_refined 0.211 r_nbd_other 0.198 r_xyhbond_nbd_refined 0.178 r_nbtor_refined 0.163 r_mcbond_other 0.158 r_nbtor_other 0.083 r_chiral_restr 0.073 r_bond_refined_d 0.013 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2817 Nucleic Acid Atoms Solvent Atoms 111 Heterogen Atoms 41
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling CCP4 phasing