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Structure of Rv1264N, the regulatory domain of the mycobacterial adenylyl cylcase Rv1264, at pH 8.5
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 291 ammonium sulphate, CAPS, lithium sulphate, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.2 44.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 120.105 α = 90 b = 54.096 β = 132.05 c = 89.341 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2003-03-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 0.934 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 50 99.3 0.064 13.8 4.6 19029 18902 69.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.34 97.1 0.405 1.6 3 938
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.35 14.89 17871 16868 911 99.49 0.2134 0.2134 0.21109 0.2182 0.25693 0.2578 RANDOM 62.865
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.23 -0.19 1.31 -1.34
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.66 r_dihedral_angle_4_deg 16.544 r_dihedral_angle_3_deg 14.467 r_dihedral_angle_1_deg 5.077 r_scangle_it 3.65 r_scbond_it 2.444 r_mcangle_it 1.417 r_angle_refined_deg 1.395 r_mcbond_it 1.236 r_angle_other_deg 0.927
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.66 r_dihedral_angle_4_deg 16.544 r_dihedral_angle_3_deg 14.467 r_dihedral_angle_1_deg 5.077 r_scangle_it 3.65 r_scbond_it 2.444 r_mcangle_it 1.417 r_angle_refined_deg 1.395 r_mcbond_it 1.236 r_angle_other_deg 0.927 r_symmetry_hbond_refined 0.368 r_symmetry_vdw_other 0.32 r_symmetry_vdw_refined 0.25 r_nbd_refined 0.219 r_nbd_other 0.199 r_mcbond_other 0.197 r_xyhbond_nbd_refined 0.176 r_nbtor_refined 0.167 r_nbtor_other 0.084 r_chiral_restr 0.08 r_bond_refined_d 0.015 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2813 Nucleic Acid Atoms Solvent Atoms 81 Heterogen Atoms 40
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling CCP4 phasing