2EV2

Structure of Rv1264N, the regulatory domain of the mycobacterial adenylyl cylcase Rv1264, at pH 8.5


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP8.5291ammonium sulphate, CAPS, lithium sulphate, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties
Matthews coefficientSolvent content
2.244.5

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 120.105α = 90
b = 54.096β = 132.05
c = 89.341γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 42003-03-14MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-10.934ESRFID14-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.35099.30.06413.84.6190291890269.6
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.32.3497.10.4051.63938

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.3514.89178711686891199.490.21340.21340.211090.25693RANDOM62.865
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.23-0.191.31-1.34
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg29.66
r_dihedral_angle_4_deg16.544
r_dihedral_angle_3_deg14.467
r_dihedral_angle_1_deg5.077
r_scangle_it3.65
r_scbond_it2.444
r_mcangle_it1.417
r_angle_refined_deg1.395
r_mcbond_it1.236
r_angle_other_deg0.927
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg29.66
r_dihedral_angle_4_deg16.544
r_dihedral_angle_3_deg14.467
r_dihedral_angle_1_deg5.077
r_scangle_it3.65
r_scbond_it2.444
r_mcangle_it1.417
r_angle_refined_deg1.395
r_mcbond_it1.236
r_angle_other_deg0.927
r_symmetry_hbond_refined0.368
r_symmetry_vdw_other0.32
r_symmetry_vdw_refined0.25
r_nbd_refined0.219
r_nbd_other0.199
r_mcbond_other0.197
r_xyhbond_nbd_refined0.176
r_nbtor_refined0.167
r_nbtor_other0.084
r_chiral_restr0.08
r_bond_refined_d0.015
r_gen_planes_refined0.005
r_bond_other_d0.001
r_gen_planes_other0.001
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2813
Nucleic Acid Atoms
Solvent Atoms81
Heterogen Atoms40

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling
CCP4phasing