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Crystal structure of a lema protein (tm0961) from thermotoga maritima msb8 at 2.28 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION,SITTING DROP,NANODROP 6.3 277 0.2M NH4NO3, 20.0% PEG-3350, No Buffer pH 6.3 , VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.29 46.39
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 80.454 α = 90 b = 85.259 β = 90 c = 53.397 γ = 90
Symmetry Space Group C 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2005-09-09 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.2 1.0163, 0.9797, 0.9796 ALS 8.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.25 30 90.1 0.067 3.5 8126
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.25 2.33 62 0.332 3.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.28 26.7 7717 375 93.03 0.219 0.216 0.2215 0.27 0.2844 RANDOM 40.488
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.66 1.78 -0.11
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.773 r_dihedral_angle_4_deg 24.674 r_dihedral_angle_3_deg 15.049 r_scangle_it 8.617 r_scbond_it 5.965 r_dihedral_angle_1_deg 5.25 r_mcangle_it 3.354 r_mcbond_it 2.243 r_angle_refined_deg 1.362 r_angle_other_deg 0.835
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.773 r_dihedral_angle_4_deg 24.674 r_dihedral_angle_3_deg 15.049 r_scangle_it 8.617 r_scbond_it 5.965 r_dihedral_angle_1_deg 5.25 r_mcangle_it 3.354 r_mcbond_it 2.243 r_angle_refined_deg 1.362 r_angle_other_deg 0.835 r_mcbond_other 0.562 r_symmetry_vdw_other 0.386 r_nbd_refined 0.218 r_xyhbond_nbd_refined 0.199 r_nbtor_refined 0.182 r_symmetry_vdw_refined 0.181 r_nbd_other 0.168 r_symmetry_hbond_refined 0.133 r_nbtor_other 0.085 r_chiral_restr 0.076 r_bond_refined_d 0.016 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1106 Nucleic Acid Atoms Solvent Atoms 62 Heterogen Atoms 1
Software Software Software Name Purpose SCALEPACK data scaling PDB_EXTRACT data extraction DENZO data reduction HKL-2000 data scaling SHELX phasing SHARP phasing REFMAC refinement