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Crystal structure of the hypothetical protein TTHB029 from Thermus thermophilus HB8
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5 295 20mM Na Acetate buffer, 300mM Mg Formate, pH 5.0, VAPOR DIFFUSION, SITTING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 3.9 68.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 202.006 α = 90 b = 202.006 β = 90 c = 345.294 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU JUPITER 210 2004-11-05 M MAD 2 1 x-ray 100 CCD RIGAKU JUPITER 210 2004-11-05 M SINGLE WAVELENGTH 1,2 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL26B2 0.900 SPring-8 BL26B2 2 SYNCHROTRON SPRING-8 BEAMLINE BL26B2 0.900, 0.97919, 0.97949 SPring-8 BL26B2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 2.9 50 100 0.07 5.6 56883 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 2.9 3 100 0.354
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.9 20 59909 56883 3026 100 0.22109 0.21904 0.1927 0.25934 0.2327 RANDOM 31.772
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.23 0.12 0.23 -0.35
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.462 r_dihedral_angle_3_deg 22.04 r_dihedral_angle_4_deg 19.872 r_dihedral_angle_1_deg 7.631 r_scangle_it 4.273 r_scbond_it 2.404 r_angle_refined_deg 1.863 r_mcangle_it 1.591 r_mcbond_it 0.903 r_nbtor_refined 0.332
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.462 r_dihedral_angle_3_deg 22.04 r_dihedral_angle_4_deg 19.872 r_dihedral_angle_1_deg 7.631 r_scangle_it 4.273 r_scbond_it 2.404 r_angle_refined_deg 1.863 r_mcangle_it 1.591 r_mcbond_it 0.903 r_nbtor_refined 0.332 r_nbd_refined 0.253 r_symmetry_vdw_refined 0.239 r_symmetry_hbond_refined 0.192 r_xyhbond_nbd_refined 0.174 r_chiral_restr 0.127 r_metal_ion_refined 0.058 r_bond_refined_d 0.017 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 12540 Nucleic Acid Atoms Solvent Atoms 132 Heterogen Atoms 6
Software Software Software Name Purpose REFMAC refinement HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling SOLVE phasing