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Crystal Structure of tt0972 protein from Thermus thermophilus
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1MOG pdb entry 1mog
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 5.8 291 SODIUM, potassium phosphate, pH 5.8, MICRO BATCH, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.6 51.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 66.36 α = 90 b = 66.36 β = 90 c = 124.566 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS V mirrors 2005-05-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL26B2 0.8 SPring-8 BL26B2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.25 50 99 0.057 24.7 3.9 96989 96989 15.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.25 1.27 98.1 0.49 3.1 3.9 8276
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT pdb entry 1mog 1.5 29.28 96989 96989 4913 98.7 0.205 0.205 0.2137 0.229 0.2367 RANDOM 19.7
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.16 0.32 -0.16 0.33
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 22.2 c_scangle_it 3.07 c_scbond_it 2.06 c_mcangle_it 2.03 c_angle_deg 1.5 c_mcbond_it 1.26 c_improper_angle_d 0.78 c_bond_d 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4256 Nucleic Acid Atoms Solvent Atoms 627 Heterogen Atoms 473
Software Software Software Name Purpose CNS refinement BSS data collection SCALEPACK data scaling MOLREP phasing