2CL2

Endo-1,3(4)-beta-glucanase from Phanerochaete chrysosporium, solved using native sulfur SAD, exhibiting intact heptasaccharide glycosylation


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
129320% PEG 3350, 0.2 M AMMONIUM NITRATE AT 20 DEG C, CONTROLLED HUMIDITY
Crystal Properties
Matthews coefficientSolvent content
2.345.9

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 38.302α = 90
b = 47.408β = 90
c = 152.194γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray77CCDMARRESEARCH2005-05-02MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-4ESRFID14-4

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1247.1499.60.0553.719193672.5
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
122.1198.80.127.518.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT1.3545.2751211273987.80.1450.1430.167RANDOM8
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.513
r_dihedral_angle_4_deg16.911
r_dihedral_angle_3_deg10.168
r_dihedral_angle_1_deg6.712
r_scangle_it1.876
r_angle_refined_deg1.714
r_scbond_it1.304
r_mcangle_it0.837
r_angle_other_deg0.754
r_mcbond_it0.657
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.513
r_dihedral_angle_4_deg16.911
r_dihedral_angle_3_deg10.168
r_dihedral_angle_1_deg6.712
r_scangle_it1.876
r_angle_refined_deg1.714
r_scbond_it1.304
r_mcangle_it0.837
r_angle_other_deg0.754
r_mcbond_it0.657
r_nbd_refined0.207
r_symmetry_vdw_other0.205
r_nbd_other0.197
r_symmetry_vdw_refined0.19
r_nbtor_refined0.177
r_symmetry_hbond_refined0.136
r_xyhbond_nbd_refined0.121
r_nbtor_other0.086
r_chiral_restr0.073
r_bond_refined_d0.007
r_gen_planes_refined0.005
r_bond_other_d0.002
r_gen_planes_other0.001
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2247
Nucleic Acid Atoms
Solvent Atoms540
Heterogen Atoms83

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling
SHELXphasing