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Endo-1,3(4)-beta-glucanase from Phanerochaete chrysosporium, solved using native sulfur SAD, exhibiting intact heptasaccharide glycosylation
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 293 20% PEG 3350, 0.2 M AMMONIUM NITRATE AT 20 DEG C, CONTROLLED HUMIDITY
Crystal Properties Matthews coefficient Solvent content 2.3 45.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 38.302 α = 90 b = 47.408 β = 90 c = 152.194 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 77 CCD MARRESEARCH 2005-05-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 47.14 99.6 0.05 53.7 19 19367 2.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.11 98.8 0.1 27.5 18.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.35 45.27 51211 2739 87.8 0.145 0.143 0.1543 0.167 0.1773 RANDOM 8
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.513 r_dihedral_angle_4_deg 16.911 r_dihedral_angle_3_deg 10.168 r_dihedral_angle_1_deg 6.712 r_scangle_it 1.876 r_angle_refined_deg 1.714 r_scbond_it 1.304 r_mcangle_it 0.837 r_angle_other_deg 0.754 r_mcbond_it 0.657
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.513 r_dihedral_angle_4_deg 16.911 r_dihedral_angle_3_deg 10.168 r_dihedral_angle_1_deg 6.712 r_scangle_it 1.876 r_angle_refined_deg 1.714 r_scbond_it 1.304 r_mcangle_it 0.837 r_angle_other_deg 0.754 r_mcbond_it 0.657 r_nbd_refined 0.207 r_symmetry_vdw_other 0.205 r_nbd_other 0.197 r_symmetry_vdw_refined 0.19 r_nbtor_refined 0.177 r_symmetry_hbond_refined 0.136 r_xyhbond_nbd_refined 0.121 r_nbtor_other 0.086 r_chiral_restr 0.073 r_bond_refined_d 0.007 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2247 Nucleic Acid Atoms Solvent Atoms 540 Heterogen Atoms 83
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling SHELX phasing