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N-terminal domain of tlg1, domain-swapped dimer
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2C5I PDB ENTRY 2C5I
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.6 20MG/ML PROTEIN, 8% PEG8000, 80MM K PHOSPHATE PH5.6, FROZEN IN 22.5% GLYCEROL, pH 5.60
Crystal Properties Matthews coefficient Solvent content 2.9 57.28
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.666 α = 90 b = 46.104 β = 90 c = 117.887 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH OSMIC MIRRORS 2004-06-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU200
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 25 96.4 0.05 16.4 3.4 14293
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.21 91.9 0.33 4.5 3.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2C5I 2.1 58.93 13533 725 96.1 0.259 0.256 0.2568 0.311 RANDOM 36.07
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.13 2.69 -2.55
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.31 r_dihedral_angle_4_deg 23.851 r_dihedral_angle_3_deg 16.301 r_dihedral_angle_1_deg 5.621 r_scangle_it 4.431 r_scbond_it 2.789 r_mcangle_it 1.582 r_angle_refined_deg 1.36 r_mcbond_it 1.04 r_nbtor_refined 0.292
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.31 r_dihedral_angle_4_deg 23.851 r_dihedral_angle_3_deg 16.301 r_dihedral_angle_1_deg 5.621 r_scangle_it 4.431 r_scbond_it 2.789 r_mcangle_it 1.582 r_angle_refined_deg 1.36 r_mcbond_it 1.04 r_nbtor_refined 0.292 r_symmetry_vdw_refined 0.251 r_nbd_refined 0.229 r_xyhbond_nbd_refined 0.185 r_symmetry_hbond_refined 0.141 r_chiral_restr 0.095 r_bond_refined_d 0.016 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1419 Nucleic Acid Atoms Solvent Atoms 75 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHASER phasing