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Structure of the Kap60p:Nup2 complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1EE4 PDB ENTRY 1EE4
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.8 EXPERIMENTAL DETALS GIVEN IN ENTRY 1UN0 AND IN MATSUURA ET AL, EMBO J, 22, 5358, 2003., pH 6.80
Crystal Properties Matthews coefficient Solvent content 2.4 49
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 129.813 α = 90 b = 140.076 β = 90 c = 63.99 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2003-04-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX14.2 SRS PX14.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 20 97.5 0.09 10 2.3 29670
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.74 98.3 0.53 1.8 2.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1EE4 2.6 20 33802 1806 97.8 0.205 0.203 0.251 RANDOM 49.39
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.02 -1.68 1.7
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 7.614 r_dihedral_angle_1_deg 6.378 r_mcangle_it 4.862 r_scbond_it 4.811 r_mcbond_it 3.069 r_angle_refined_deg 1.741 r_angle_other_deg 1.023 r_symmetry_hbond_refined 0.447 r_symmetry_vdw_other 0.303 r_nbd_other 0.231
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 7.614 r_dihedral_angle_1_deg 6.378 r_mcangle_it 4.862 r_scbond_it 4.811 r_mcbond_it 3.069 r_angle_refined_deg 1.741 r_angle_other_deg 1.023 r_symmetry_hbond_refined 0.447 r_symmetry_vdw_other 0.303 r_nbd_other 0.231 r_nbd_refined 0.23 r_xyhbond_nbd_refined 0.229 r_symmetry_vdw_refined 0.199 r_chiral_restr 0.111 r_nbtor_other 0.091 r_bond_refined_d 0.012 r_gen_planes_refined 0.006 r_gen_planes_other 0.003 r_bond_other_d 0.001 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7122 Nucleic Acid Atoms Solvent Atoms 151 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling CNS phasing