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Type II Dehydroquinase inhibitor complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1GU1 PDB ENTRY 1GU1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 15% PEG8K, 0.2M NAKPHOSPHATE, 0.1M MOPS/HCL PH6.5, pH 6.50
Crystal Properties Matthews coefficient Solvent content 2.4 42
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 196.616 α = 65.91 b = 196.487 β = 65.91 c = 240.626 γ = 90.01
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD MIRRORS 2004-03-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX14.1 SRS PX14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 30 93.7 0.17 2.8 2.4 3557702 17.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.73 89.6 0.9 1 2.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1GU1 1.7 27 2328347 123052 75.8 0.199 0.197 0.248 RANDOM 12.46
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.35 -0.05 -0.21 -0.89 0.31 0.46
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.994 r_dihedral_angle_3_deg 12.759 r_dihedral_angle_4_deg 12.436 r_dihedral_angle_1_deg 5.688 r_scangle_it 3.398 r_scbond_it 2.489 r_angle_refined_deg 1.865 r_angle_other_deg 1.679 r_mcangle_it 1.495 r_mcbond_it 1.238
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.994 r_dihedral_angle_3_deg 12.759 r_dihedral_angle_4_deg 12.436 r_dihedral_angle_1_deg 5.688 r_scangle_it 3.398 r_scbond_it 2.489 r_angle_refined_deg 1.865 r_angle_other_deg 1.679 r_mcangle_it 1.495 r_mcbond_it 1.238 r_symmetry_vdw_other 0.341 r_symmetry_vdw_refined 0.32 r_xyhbond_nbd_refined 0.233 r_nbd_refined 0.225 r_symmetry_hbond_refined 0.219 r_nbd_other 0.209 r_nbtor_refined 0.188 r_chiral_restr 0.114 r_nbtor_other 0.094 r_bond_refined_d 0.022 r_gen_planes_refined 0.01 r_gen_planes_other 0.004 r_bond_other_d 0.003 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 13452 Nucleic Acid Atoms Solvent Atoms 1731 Heterogen Atoms 388
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling AMoRE phasing