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X-ray structure of the M100K variant of ferric cyt c-550 from Paracoccus versutus determined at 100 K.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 9 3.2 M AMMONIUM SULFATE, 0.1 M BICINE PH9, pH 9.00
Crystal Properties Matthews coefficient Solvent content 2 37
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 30.868 α = 90 b = 42.88 β = 90 c = 87.48 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH MIRRORS 2003-11-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM30A ESRF BM30A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.55 43.85 97.7 0.04 20.6 3.7 17450 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.55 1.58 82.6 0.05 11.7 1.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT 1.55 43.85 16211 836 97.7 0.15 0.147 0.1617 0.202 0.2041 RANDOM 17.18
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.76 0.74 -1.51
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.19 r_dihedral_angle_4_deg 16.069 r_dihedral_angle_3_deg 13.666 r_scangle_it 5.389 r_dihedral_angle_1_deg 4.916 r_scbond_it 4.29 r_mcangle_it 3.089 r_mcbond_it 2.625 r_angle_refined_deg 1.438 r_angle_other_deg 0.826
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.19 r_dihedral_angle_4_deg 16.069 r_dihedral_angle_3_deg 13.666 r_scangle_it 5.389 r_dihedral_angle_1_deg 4.916 r_scbond_it 4.29 r_mcangle_it 3.089 r_mcbond_it 2.625 r_angle_refined_deg 1.438 r_angle_other_deg 0.826 r_nbd_refined 0.29 r_symmetry_hbond_refined 0.19 r_nbtor_refined 0.183 r_nbd_other 0.18 r_symmetry_vdw_other 0.168 r_symmetry_vdw_refined 0.158 r_xyhbond_nbd_refined 0.147 r_nbtor_other 0.088 r_chiral_restr 0.087 r_bond_refined_d 0.012 r_gen_planes_refined 0.009 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 911 Nucleic Acid Atoms Solvent Atoms 140 Heterogen Atoms 43
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling