2BH4

X-ray structure of the M100K variant of ferric cyt c-550 from Paracoccus versutus determined at 100 K.


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
193.2 M AMMONIUM SULFATE, 0.1 M BICINE PH9, pH 9.00
Crystal Properties
Matthews coefficientSolvent content
237

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 30.868α = 90
b = 42.88β = 90
c = 87.48γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCHMIRRORS2003-11-28MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE BM30AESRFBM30A

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.5543.8597.70.0420.63.7174502
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.551.5882.60.0511.71.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONOTHERTHROUGHOUT1.5543.851621183697.70.150.1470.202RANDOM17.18
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.760.74-1.51
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.19
r_dihedral_angle_4_deg16.069
r_dihedral_angle_3_deg13.666
r_scangle_it5.389
r_dihedral_angle_1_deg4.916
r_scbond_it4.29
r_mcangle_it3.089
r_mcbond_it2.625
r_angle_refined_deg1.438
r_angle_other_deg0.826
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.19
r_dihedral_angle_4_deg16.069
r_dihedral_angle_3_deg13.666
r_scangle_it5.389
r_dihedral_angle_1_deg4.916
r_scbond_it4.29
r_mcangle_it3.089
r_mcbond_it2.625
r_angle_refined_deg1.438
r_angle_other_deg0.826
r_nbd_refined0.29
r_symmetry_hbond_refined0.19
r_nbtor_refined0.183
r_nbd_other0.18
r_symmetry_vdw_other0.168
r_symmetry_vdw_refined0.158
r_xyhbond_nbd_refined0.147
r_nbtor_other0.088
r_chiral_restr0.087
r_bond_refined_d0.012
r_gen_planes_refined0.009
r_gen_planes_other0.002
r_bond_other_d0.001
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms911
Nucleic Acid Atoms
Solvent Atoms140
Heterogen Atoms43

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
SCALEPACKdata scaling