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carboxysome shell protein ccmK4, crystal form 2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2A10
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.6 293 0.1M sodium citrate, pH 4.6, 30% PEG 4000, 0.2M ammonium acetate, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.2 43.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 70.549 α = 90 b = 125.04 β = 90 c = 32.521 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2005-06-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.1 0.95373 ALS 8.2.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.28 90 99.9 0.113 23.2 13.6 13846 13846 42.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.28 2.36 100 0.373 8.7 13.9 1346
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2A10 2.28 62.5 13071 13071 686 99.81 0.20364 0.20364 0.20262 0.2017 0.22236 0.2209 RANDOM 35.61
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.78 1.3 0.48
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.437 r_dihedral_angle_4_deg 18.779 r_dihedral_angle_3_deg 13.374 r_dihedral_angle_1_deg 4.292 r_scangle_it 2.019 r_scbond_it 1.161 r_mcangle_it 1.129 r_angle_refined_deg 1.006 r_mcbond_it 0.635 r_nbtor_refined 0.291
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.437 r_dihedral_angle_4_deg 18.779 r_dihedral_angle_3_deg 13.374 r_dihedral_angle_1_deg 4.292 r_scangle_it 2.019 r_scbond_it 1.161 r_mcangle_it 1.129 r_angle_refined_deg 1.006 r_mcbond_it 0.635 r_nbtor_refined 0.291 r_nbd_refined 0.19 r_symmetry_vdw_refined 0.158 r_symmetry_hbond_refined 0.12 r_xyhbond_nbd_refined 0.103 r_chiral_restr 0.064 r_bond_refined_d 0.008 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2325 Nucleic Acid Atoms Solvent Atoms 80 Heterogen Atoms 3
Software Software Software Name Purpose Blu-Ice data collection SCALEPACK data scaling PHASER phasing REFMAC refinement